rs30913047 SNP Detail

Summary

• ID
  rs30913047
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116900120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTATTATT TACCCTTCCT GGAGGCAACC ATTCCCATTT
  TCGTGCTTAT TTTTTCCTTT GGGAAAGTTA TTTATCAATA GATTACTAAA TGATTTTTTT
  W
  TAAAGGAGTC TTCATTTAAT CTTTCAGACA TGATCTGACT GTGTAGCTCT GGCTTAGCTC
  GGAACTCACG TTGTGGACCC AGGCTGGCCA TTCTGGGATG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss47996359	NES12000924	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30913047					SNP	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47996359	NES12000924	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116900120 () rs orientation: forward

Symbol	Name	Function Class
Cct2	chaperonin containing TCP1 subunit 2	401 bp upstream
Cpgi2223	CpG island 2223	177 bp distal
Rr402250	regulatory region 402250	182 bp downstream
Rr439433	regulatory region 439433	within coordinates
Rr439434	regulatory region 439434	338 bp proximal
Rr439435	regulatory region 439435	536 bp proximal
Rr439436	regulatory region 439436	909 bp proximal
Tssr99381	transcription start site region 99381	1157 bp upstream
Tssr99382	transcription start site region 99382	849 bp upstream
Tssr99383	transcription start site region 99383	463 bp upstream
Tssr99384	transcription start site region 99384	413 bp upstream