rs30913049 SNP Detail

Summary

• ID
  rs30913049
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116900729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGCTCACA ACCACCTGTA ATGAGATCTG ATGCCCTCCT
  CTGGTGCGTC TGAAGAGTCA GCTACAGTGT ACTTATGTAT AATAATAAAT AAATCTTTGG
  S
  TCAGAGCGAG CAGGAACTGA GTGGAGTTGA CCAGAGCAAG CTGAGGTCCT AAAAATTCTA
  TTCCCAAGAA GGCTCGCAAC CATCTGTACA GCTACAGTGT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47996361	NES12000835	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30913049					SNP	G	G	G	C	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47996361	NES12000835	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116900729 () rs orientation: forward

Symbol	Name	Function Class
Cct2	chaperonin containing TCP1 subunit 2	1010 bp upstream
Cpgi2223	CpG island 2223	786 bp distal
Rr402250	regulatory region 402250	791 bp downstream
Rr439433	regulatory region 439433	520 bp distal
Rr439434	regulatory region 439434	250 bp distal
Rr439435	regulatory region 439435	52 bp distal
Rr439436	regulatory region 439436	300 bp proximal
Tssr99381	transcription start site region 99381	1766 bp upstream
Tssr99382	transcription start site region 99382	1458 bp upstream
Tssr99383	transcription start site region 99383	1072 bp upstream
Tssr99384	transcription start site region 99384	1022 bp upstream