rs30913051 SNP Detail

Summary

• ID
  rs30913051
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116900744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTAATGAG ATCTGATGCC CTCCTCTGGT GCGTCTGAAG
  AGTCAGCTAC AGTGTACTTA TGTATAATAA TAAATAAATC TTTGGCTCAG AGCGAGCAGG
  R
  ACTGAGTGGA GTTGACCAGA GCAAGCTGAG GTCCTAAAAA TTCTATTCCC AAGAAGGCTC
  GCAACCATCT GTACAGCTAC AGTGTACTCA CATAAATAAT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss47996363	NES12000836	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30913051					SNP	G	G	G	G	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47996363	NES12000836	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116900744 () rs orientation: forward

Symbol	Name	Function Class
Cct2	chaperonin containing TCP1 subunit 2	1025 bp upstream
Cpgi2223	CpG island 2223	801 bp distal
Rr402250	regulatory region 402250	806 bp downstream
Rr439433	regulatory region 439433	535 bp distal
Rr439434	regulatory region 439434	265 bp distal
Rr439435	regulatory region 439435	67 bp distal
Rr439436	regulatory region 439436	285 bp proximal
Tssr99381	transcription start site region 99381	1781 bp upstream
Tssr99382	transcription start site region 99382	1473 bp upstream
Tssr99383	transcription start site region 99383	1087 bp upstream
Tssr99384	transcription start site region 99384	1037 bp upstream