rs30913053 SNP Detail

Summary

• ID
  rs30913053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116900780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGATGGCT CTTCCGAAGG
  TCCTGAGTTC AAATCCCAGC AACCATAGGT TGGCTCACAA CCACCTGTAA TGAGATCTGA
  TGCCCTCCTC TGGTGCGTCT GAAGAGTCAG CTACAGTGTA CTTATGTATA ATAATAAATA
  AATCTTTGGC TCAGAGCGAG CAGGAACTGA GTGGAGTTGA CCAGAGCAAG CTGAGGTCCT
  R
  AAAATTCTAT TCCCAAGAAG GCTCGCAACC ATCTGTACAG CTACAGTGTA CTCACATAAA
  TAATCTTTTA AAAAAAGAGA GAAATGGTTA AAACATACAT AGTCTAGGGA AAAGCCCCAA
  AACTAATGCA AAAAAAAAAA AAAAGTTTTC TCGGCGCTAG CGAGATGGCT CAGCGGTTAA
  GAGCAGTGGC TGCTCTTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss47996365	NES12000837	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		G	A	G
ss323494034	CHEV_10_116501931	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs30913053					SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47996365	NES12000837	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116900780 () rs orientation: forward

Symbol	Name	Function Class
Cct2	chaperonin containing TCP1 subunit 2	1061 bp upstream
Cpgi2223	CpG island 2223	837 bp distal
Rr402250	regulatory region 402250	842 bp downstream
Rr439433	regulatory region 439433	571 bp distal
Rr439434	regulatory region 439434	301 bp distal
Rr439435	regulatory region 439435	103 bp distal
Rr439436	regulatory region 439436	249 bp proximal
Rr439437	regulatory region 439437	1994 bp proximal
Tssr99381	transcription start site region 99381	1817 bp upstream
Tssr99382	transcription start site region 99382	1509 bp upstream
Tssr99383	transcription start site region 99383	1123 bp upstream
Tssr99384	transcription start site region 99384	1073 bp upstream