rs30913180 SNP Detail

Summary

• ID
  rs30913180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67386552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTATCACGC TAAAAGGAAA
  TATTTGCCTG AGATTAGCAG TTAATATTTA CTTTCACTGA AAAAAAAAAG TTGACAAAAT
  AAGAACAATT CAGCAACATA AAATAACCAC AATATGTCCA GAGTAATGAA AAATACAAAC
  TCAAAACAAA AAAGACGAAA CCTTTTCCCA AAGCAATTGT TGATCCATCT GCTATGTGGT
  R
  GATGTGCTGA GCCTGCCGAG CCCAATCAGG GAGCCCAATC AGGAAAGTGC GCATGCTCGT
  GGAGTTCAGC ACCACCGTGG TGTTTAGAAT ATAATAGAAG CAGATCATTT CTTCTCTTTA
  GAAATTACCG AACTCTGGCG GTGCCATAGC TGATGCTTCC ATAGTTCCAG AGGCTTCTTC
  TGGGCTCTGC TGCTCTTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46996587	NES10782938	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30913180					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46996587	NES10782938	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67386552 () rs orientation: forward

Symbol	Name	Function Class
Gm42568	predicted gene 42568	401 bp downstream
Rarres1	retinoic acid receptor responder (tazarotene induced) 1	mRNA-UTR