rs30913560 SNP Detail

Summary

• ID
  rs30913560
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86286401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCACGTAA CCCAACTGCT TCCCACTTTC TCTCGCTTCC
  AGCCCCACCA CGTGGAGTCA CCACGCCGCC ACCTCAGGGG TCCACCACGT GTCCATCCCG
  R
  TCACCGGCAG AGACAGCAGA TCGCCGGGCC ACCCATCCAT CCCCACGCTG CCGTCCCCCT
  TTCCGGGGTA CTACAGACAC TCCCCCACTG CCCCGGGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss44977338	mCV24369645	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss144876551	ENSMUSSNP5844852	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30913560					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86286401 () rs orientation: forward

Symbol	Name	Function Class
C130036L24Rik	RIKEN cDNA C130036L24 gene	905 bp upstream
Cpgi503	CpG island 503	within coordinates
D1Mit516	DNA Segment, Chr 1, Massachusetts Institute of Technology-516	571 bp distal
Gm71192	predicted gene, 71192	973 bp downstream
Ncl	nucleolin	within coordinates
Rr29752	regulatory region 29752	within coordinates
Rr396146	regulatory region 396146	636 bp upstream
Tssr142	transcription start site region 142	1648 bp downstream
Tssr7746	transcription start site region 7746	1618 bp downstream
Tssr7747	transcription start site region 7747	1566 bp downstream
Tssr7748	transcription start site region 7748	1385 bp downstream
Tssr7749	transcription start site region 7749	874 bp upstream
Tssr7750	transcription start site region 7750	959 bp upstream
Tssr12777	transcription start site region 12777	1607 bp upstream
Tssr12778	transcription start site region 12778	1530 bp upstream
Tssr12779	transcription start site region 12779	1511 bp upstream
Tssr12780	transcription start site region 12780	1458 bp upstream
Tssr12781	transcription start site region 12781	1410 bp upstream
Tssr12782	transcription start site region 12782	1335 bp upstream
Tssr12783	transcription start site region 12783	1301 bp upstream
Tssr12784	transcription start site region 12784	1274 bp upstream
Tssr12785	transcription start site region 12785	1245 bp upstream
Tssr12786	transcription start site region 12786	447 bp upstream
Tssr12787	transcription start site region 12787	198 bp upstream
Tssr12788	transcription start site region 12788	291 bp downstream
Tssr12789	transcription start site region 12789	339 bp downstream
Tssr12790	transcription start site region 12790	679 bp downstream
Tssr12791	transcription start site region 12791	802 bp downstream
Tssr12792	transcription start site region 12792	1272 bp downstream