rs30913576 SNP Detail

Summary

• ID
  rs30913576
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138148667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGCCCGG GAAGAGGGGG
  GCGGGGGGAC CGCGGACAGG GACACACGGA AGGCGTGGCT TGTTCTACAC GTGCTTTCCC
  ACACGTGTTA CCACACGCTA TATTTCTCTC ACGTCTAACG TACAAAGACT GCACGAAAAT
  TAGACAAGGA AATACCACAG AGATGCTTTG CAGGGGCTCA GTTGAGCCAG CCTGGAATAA
  W
  GCGCTTCACG GCCCCAAAAC TACTGCCTCC CCAGCAACGG AGCGCAGTAG CCGAAACTCA
  GGCTCCGAAA CGCGGGCCCC GCCCTTCCGG TATTAGGCCC GCCTCCCAGC CGAGTCCCGC
  CCTACGCACA GCCACCTCCT CCCGCCCTCA CGTACGCCCC GCCTACATCG AAGGCCCGCC
  TCCCGCGCAC AGCCCCTCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46997626	NES10890821	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30913576					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46997626	NES10890821	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138148667 () rs orientation: forward

Symbol	Name	Function Class
Adh5	alcohol dehydrogenase 5 (class III), chi polypeptide	Intron
Cpgi13874	CpG island 13874	within coordinates
Gm64924	predicted gene, 64924	within coordinates
Rr398071	regulatory region 398071	28 bp upstream
Rr586135	regulatory region 586135	319 bp distal
Rr586136	regulatory region 586136	within coordinates
Rr586137	regulatory region 586137	198 bp proximal
Rr586138	regulatory region 586138	647 bp proximal
Rr586139	regulatory region 586139	1502 bp proximal
Tssr31984	transcription start site region 31984	179 bp upstream