rs30913580 SNP Detail

Summary

• ID
  rs30913580
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138149266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC GACCTTGGCT TTCTACGTGC
  W
  GCACGGTGTA CCTGTTTTTT TCAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss46997630	NES10890824	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	A	T		A	T
ss320980176	CHEV_3_138106469	CHEVERUD	SCREENING_POP	f	SNP								A			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs30913580					SNP	A	A	T	A	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46997630	NES10890824	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138149266 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adh5	alcohol dehydrogenase 5 (class III), chi polypeptide			Intron
				mRNA-UTR
Cpgi13874	CpG island 13874			within coordinates
Gm64924	predicted gene, 64924			within coordinates
Rr398071	regulatory region 398071			270 bp downstream
Rr586135	regulatory region 586135			918 bp distal
Rr586136	regulatory region 586136			402 bp distal
Rr586137	regulatory region 586137			within coordinates
Rr586138	regulatory region 586138			48 bp proximal
Rr586139	regulatory region 586139			903 bp proximal
Tssr31984	transcription start site region 31984			329 bp downstream