rs30913582 SNP Detail

Summary

• ID
  rs30913582
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138149431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGCCCTT CCTTCGACCT
  TGGCTTTCTA CGTGCAGCAC GGTGTACCTG TTTTTTTCAA ATCACGTTAT TTGACTTTCA
  AGTCCATCTC CAGTAAACCC AGTGAGTGGC TTGCAACCTT TATTCTGTCA ACACATTTCA
  TAAGCGTCAA GTGAACTGAT CAAAACCCAG CATTTCTCAC TAGGTTTGGT TCCGTGGTTA
  R
  GAAGGTCTGT ACTGAGTGTA ATCGCTCTAG TAGCTCATTG CTTTAGATGC GCGATATAAA
  TTTCATATGG AATTGTAAAC TTTACAGAGC CACATAAAAT TAATTCTAAT GGTATGTTTA
  CCCAACCTGA TACTCGCAAT ATTATTTCCA CGTTATAAGT ATTTTTAAAT TGAGATATTC
  TTCACTCTTC TAAGCTTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46997632	NES10890825	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30913582					SNP	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46997632	NES10890825	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138149431 () rs orientation: forward

Symbol	Name	Function Class
Adh5	alcohol dehydrogenase 5 (class III), chi polypeptide	Intron
Cpgi13874	CpG island 13874	64 bp distal
Gm64924	predicted gene, 64924	107 bp upstream
Rr398071	regulatory region 398071	435 bp downstream
Rr586135	regulatory region 586135	1083 bp distal
Rr586136	regulatory region 586136	567 bp distal
Rr586137	regulatory region 586137	118 bp distal
Rr586138	regulatory region 586138	within coordinates
Rr586139	regulatory region 586139	738 bp proximal
Tssr31984	transcription start site region 31984	494 bp downstream