rs30913705 SNP Detail

Summary

• ID
  rs30913705
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116901576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCGGGAGG CAGAGGCAGG
  CAGATTTCTG AGTTCGAGGC CAGCCTGGTC TACAAAGTGA GTTCCAGGAC AGCCAGGACT
  ACACAGAGAA ACCCTGTCTC AAAAACACCA AAAAAAAACA AAAACAGAAA ATATTTTTTT
  CTCTTTACTC TTGACACCTA AGGCAAAGCT CTCGTGCTTA AAAAAAGAAT GTTAGTTTTC
  M
  TTTTATCCAC TGGTAGGTAG CATTTATCTC TCTGATCACT TAGCAAGTAC TTATATTTCT
  GATACTTGCC GACACTCAGT CATTTTCCAT TTTTAGTTAT TTTTACCCTT AGATATAGTA
  AACTAATTTA TATTGAGTTG GCAAGCTATG GAGAGTCAAA TCTAGTTATC AACTGCTTAT
  AAAGTCTTAA GCACTTAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss47996367	NES12000810	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	A	C	C		A	C	A
ss323494039	CHEV_10_116502727	CHEVERUD	SCREENING_POP	f	SNP							C				A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs30913705					SNP	C	A	C	A	C	C	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47996367	NES12000810	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116901576 () rs orientation: forward

Symbol	Name	Function Class
Cct2	chaperonin containing TCP1 subunit 2	1857 bp upstream
Cpgi2223	CpG island 2223	1633 bp distal
Rr402250	regulatory region 402250	1638 bp downstream
Rr439433	regulatory region 439433	1367 bp distal
Rr439434	regulatory region 439434	1097 bp distal
Rr439435	regulatory region 439435	899 bp distal
Rr439436	regulatory region 439436	526 bp distal
Rr439437	regulatory region 439437	1198 bp proximal
Tssr99383	transcription start site region 99383	1919 bp upstream
Tssr99384	transcription start site region 99384	1869 bp upstream