rs30914394 SNP Detail

Summary

• ID
  rs30914394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138149460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCT GTACTGAGTG TAATCGCTCT
  R
  GTAGCTCATT GCTTTAGATG CGCGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46997634	NES10890827	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A	G		G	G	A	G		G
ss320980178	CHEV_3_138106663	CHEVERUD	SCREENING_POP	f	SNP								A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30914394					SNP	A	A	G	A	G	A	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46997634	NES10890827	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138149460 () rs orientation: forward

Symbol	Name	Function Class
Adh5	alcohol dehydrogenase 5 (class III), chi polypeptide	Intron
Cpgi13874	CpG island 13874	93 bp distal
Gm64924	predicted gene, 64924	136 bp upstream
Rr398071	regulatory region 398071	464 bp downstream
Rr586135	regulatory region 586135	1112 bp distal
Rr586136	regulatory region 586136	596 bp distal
Rr586137	regulatory region 586137	147 bp distal
Rr586138	regulatory region 586138	within coordinates
Rr586139	regulatory region 586139	709 bp proximal
Tssr31984	transcription start site region 31984	523 bp downstream