rs30914775 SNP Detail

Summary

• ID
  rs30914775
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10107807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGACG CCCCACAGAA AGCCAAGCTC
  W
  CCACACCCTT CATCTCCCAC CCCTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44977902	mCV23215947	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss148572935	ENSMUSSNP4970523	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss319632124	CHEV_1_10027663	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30914775					SNP	T	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10107807 () rs orientation: forward

Symbol	Name	Function Class
Cops5	COP9 signalosome subunit 5	within coordinates
Cpgi31	CpG island 31	within coordinates
Cpgi32	CpG island 32	1939 bp proximal
Cspp1	centrosome and spindle pole associated protein 1	405 bp upstream
Rr407692	regulatory region 407692	313 bp proximal
Rr407693	regulatory region 407693	535 bp proximal
Rr407694	regulatory region 407694	691 bp proximal
Rr407695	regulatory region 407695	1701 bp proximal
Tssr4	transcription start site region 4	626 bp upstream
Tssr10955	transcription start site region 10955	301 bp downstream
Tssr10956	transcription start site region 10956	340 bp downstream
Tssr10957	transcription start site region 10957	350 bp downstream
Tssr10958	transcription start site region 10958	524 bp downstream