rs30917213 SNP Detail

Summary

• ID
  rs30917213
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3027547 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  AACACTAAAA AAGGTGGAAA ATTTAGAAAT GTCCACTGTA AGACATGGAA TATGGCAAGA
  AAACTGAAAA TCACGGAAAA TGAGAATAGC ACTAGTTGGG TAGTAAAATA TGACAAGAAT
  TATTGAAAAA CATGAAAAAT GAGAAATGCA CACTGTAGGA CCTGGAATAT GGCAAGAAAA
  CTGAAAATCA CGGAAAATGA GAAATACACA CTTTAGGACG TGAAATATAG CGAGGAAAAC
  TGAAAAAGTT AGAGAATTTA TAAATATCCA CTGTAGGACA TGGAATATGG CAAGAAAACT
  R
  AAAATCATGG AAAATGAGAA ATACACACTT TAGGACGTGA AATATGGCGA GGAAAACTGA
  AAAAGGTGGA AAATTTAGAA ATGTCCACTG TAAGACATTG AATATAGCAA GATAACTGAA
  AATGTGGATC ATGAGTAATA CACGCTTTAG GACGTGAAAT ATGACGAGGA AAACTGAAAA
  GGGTGGAAAA TTTAGAAATG TCCAGTGTAG GACATGGAAT ATGGCAAGAA AACTGAAATT
  AATGGAAAAT GAGAAACATC CACTTGACGA ATTGAAAAAT GACGAAATCG CTGAAAAACG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss46457744	mCV22848614	ABI	CRAMUS_MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs30917213					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3027547 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi21323	CpG island 21323	1639 bp distal
Cpgi21324	CpG island 21324	367 bp distal
Cpgi21325	CpG island 21325	1840 bp proximal
Rr673606	regulatory region 673606	1017 bp distal
Rr673607	regulatory region 673607	537 bp distal
Rr673608	regulatory region 673608	within coordinates
Rr673609	regulatory region 673609	334 bp proximal
Rr673610	regulatory region 673610	1334 bp proximal
Tssr83580	transcription start site region 83580	1919 bp downstream
Tssr83581	transcription start site region 83581	1674 bp downstream
Tssr83582	transcription start site region 83582	1052 bp downstream
Tssr83583	transcription start site region 83583	865 bp downstream
Tssr83584	transcription start site region 83584	778 bp downstream
Tssr83585	transcription start site region 83585	402 bp downstream
Tssr83586	transcription start site region 83586	79 bp downstream
Tssr83587	transcription start site region 83587	208 bp upstream
Tssr83588	transcription start site region 83588	1824 bp upstream
Tssr88018	transcription start site region 88018	1989 bp upstream
Tssr88019	transcription start site region 88019	827 bp upstream
Tssr88020	transcription start site region 88020	759 bp upstream
Tssr88021	transcription start site region 88021	135 bp upstream
Tssr88022	transcription start site region 88022	59 bp upstream
Tssr88023	transcription start site region 88023	1855 bp downstream