rs30917958 SNP Detail

Summary

• ID
  rs30917958
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:28426312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTG CCTGCATGCT CTCTCTTGTC
  K
  TTGGAGCCTG GAGCCTTGCT CTCTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss45978767	mCV24696210	ABI	CRAMUS_MOUSE	f	SNP	T	G
ss133088259	ENSMUSSNP4046066	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss321773895	CHEV_6_28376313	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs30917958					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:28426312 () rs orientation: forward

Symbol	Name	Function Class
Arf5	ARF GTPase 5	within coordinates
Cpgi17216	CpG island 17216	1980 bp distal
Fscn3	fascin actin-bundling protein 3	1576 bp upstream
Rr627384	regulatory region 627384	886 bp proximal
Tssr55191	transcription start site region 55191	1964 bp downstream
Tssr55192	transcription start site region 55192	1724 bp downstream
Tssr55193	transcription start site region 55193	48 bp downstream
Tssr55194	transcription start site region 55194	within coordinates
Tssr55195	transcription start site region 55195	30 bp upstream
Tssr55196	transcription start site region 55196	66 bp upstream
Tssr55197	transcription start site region 55197	179 bp upstream
Tssr55198	transcription start site region 55198	1569 bp upstream
Tssr55199	transcription start site region 55199	1605 bp upstream