rs30918013 SNP Detail

Summary

• ID
  rs30918013
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10583386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAT TGAGGATTGG TCCAGGCCTG
  R
  TGGGACGGAG AGCGAAGTGT GAGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44977663	mCV23007542	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss146043933	ENSMUSSNP133163	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss325720707	CHEV_19_10680512	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30918013					SNP	A	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10583386 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10615	CpG island 10615	within coordinates
Ddb1	damage specific DNA binding protein 1	within coordinates
Gm59162	predicted gene, 59162	479 bp downstream
Rr362968	regulatory region 362968	within coordinates
Rr405857	regulatory region 405857	366 bp downstream
Tkfc	triokinase, FMN cyclase	368 bp upstream
Tssr155068	transcription start site region 155068	468 bp downstream
Tssr155069	transcription start site region 155069	408 bp downstream
Tssr155070	transcription start site region 155070	378 bp downstream
Tssr155071	transcription start site region 155071	327 bp downstream
Tssr155072	transcription start site region 155072	74 bp downstream
Tssr155073	transcription start site region 155073	251 bp upstream
Tssr155074	transcription start site region 155074	1770 bp upstream
Tssr158200	transcription start site region 158200	1707 bp upstream
Tssr158201	transcription start site region 158201	1685 bp upstream
Tssr158202	transcription start site region 158202	1655 bp upstream
Tssr158203	transcription start site region 158203	1625 bp upstream
Tssr158204	transcription start site region 158204	617 bp upstream
Tssr158205	transcription start site region 158205	556 bp upstream
Tssr158206	transcription start site region 158206	552 bp upstream
Tssr158207	transcription start site region 158207	107 bp upstream