rs30918372 SNP Detail

Summary

• ID
  rs30918372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:67471909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCAGTTT TGTTTGTTTG
  TTGTTTGTTG TTGTAAGGTT CTGTTAGGAG AAGGACTGCA AGCCCCTGTA ATAGCACTGA
  CATTCTCTAA GATGGTGGAG AGTGGTTCGC GGAGGTAAAG ACAGCAGAGA GATCTCTCTC
  TGTGCTTATA TGGATCTTTC ATCCAAAGAC AGAAATGCCA AGCTGTTAGT ATTACAGATG
  Y
  TGAAATCACA TGATTATGGT TTTAGTCACC CCACCACAGA ATTTGCTCTT GATTTAGATA
  ATTTGAGTTA TTAAGGCAAG GCTACCACAC CCTTGGTGAG GCCATGCTCA ACCAGGCTCC
  CTCCTGAAGC ATGGGAGCCC TGAGCATCTC AAGATACGCT CAACCCTTGG GAGGTCCTGC
  CTTGTTCTTC TACTGAGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46997393	NES10780980	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30918372					SNP	T	T	T	T	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46997393	NES10780980	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67471909 () rs orientation: forward

Symbol	Name	Function Class
Rr577945	regulatory region 577945	45 bp proximal
Rr577946	regulatory region 577946	350 bp proximal