rs30918544 SNP Detail

Summary

• ID
  rs30918544
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135765813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTCCTCTG TGGGAGCACT TCTTAGTGCT
  CTCAGTGCTC TTTTGGGATG CATTTCCTGG TGTTCCCGGG GACAGGAACC AAGGTGTTCC
  CACTTCTTCT CATCTGCCCC AGTGATTGTA AGCTTGTGGG AGGGCAGGAG AGAAGCCCTG
  R
  GGCAGCCACA CACCTCCCAC TTCCAGATCG TTCCCCTCAT CCCCATCCCA GGCAATGGTC
  TCCTCCTCAC AGGTCCTGAT AGCTCCCCCT GGGGTCTGGA CAAGGTGAGT CTACACTACC
  AGACTCCTGG ACTCAGGAGT GGCCGTGCTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49683410	NES12973046	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	G	G	G	A	G	A		A	G	A		G
ss145548036	ENSMUSSNP3129982	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss319993843	CHEV_1_137734652	CHEVERUD	SCREENING_POP	f	SNP												A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30918544					SNP	A	A	G	A	G	G	G	G	A	G	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683410	NES12973046	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135765813 () rs orientation: forward

Symbol	Name	Function Class
Rr419294	regulatory region 419294	1652 bp distal
Rr419295	regulatory region 419295	1343 bp distal
Rr419296	regulatory region 419296	490 bp distal
Rr419297	regulatory region 419297	within coordinates
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9005	transcription start site region 9005	1679 bp downstream
Tssr9006	transcription start site region 9006	335 bp upstream
Tssr9007	transcription start site region 9007	832 bp upstream