rs30918548 SNP Detail

Summary

• ID
  rs30918548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135765557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATAGGTAA AATGACTAAA
  ACTTCAGAGA GCTTAAGTGA CCAGCCTAAG GCCACACAGT AAAAGCTGGG CTTAAAACTC
  AGACCTTTTG ATCCCCCAAA GAGTCATCTT CTGGCTTCTG CTGTTTTTCT TTATTGCCCA
  TGAAAGGTGA CCCCTGTGGC TTGTTGTGAG GGTGGTCAGA TGGTAAGAAG GTGGTGAAAG
  Y
  GCAGGGCCCT GGGGACATGC TCCTAGTTAC CCCTCCAGCT CCCCCATCTC CTCCTATTTG
  GTAGCCCTCA GGTTCAGCAT CCCCTTAATT CACCTGGCTT AGGTGTGGTC CTCTGTGGGA
  GCACTTCTTA GTGCTCTCAG TGCTCTTTTG GGATGCATTT CCTGGTGTTC CCGGGGACAG
  GAACCAAGGT GTTCCCACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49683414	NES12973042	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30918548					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683414	NES12973042	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135765557 () rs orientation: forward

Symbol	Name	Function Class
Rr419294	regulatory region 419294	1396 bp distal
Rr419295	regulatory region 419295	1087 bp distal
Rr419296	regulatory region 419296	234 bp distal
Rr419297	regulatory region 419297	within coordinates
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9005	transcription start site region 9005	1423 bp downstream
Tssr9006	transcription start site region 9006	591 bp upstream
Tssr9007	transcription start site region 9007	1088 bp upstream