rs30918684 SNP Detail

Summary

• ID
  rs30918684
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138194445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAACGCGAT GGGACACAAA TACTGTTCAA TAAATACACA
  CTTCTGTCAG GGCCCCACTC AGTGCTAGGT TTGCTCAGTT GCACAAAAAC TACGTCGGAG
  S
  CTTGAAGCAC AACCCCTGCG GGACTGTCCT TTCTACTCCA GGAACTTCAG TAACAGAAGT
  GACTCATCTC TTTACCTTAC CGGTTCTCAA ATTAATAATC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46997978	NES10889057	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30918684					SNP	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46997978	NES10889057	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138194445 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13875	CpG island 13875	126 bp proximal
Gm32553	predicted gene, 32553	1221 bp upstream
Metap1	methionyl aminopeptidase 1	Intron
Rr586147	regulatory region 586147	704 bp proximal
Tssr31986	transcription start site region 31986	185 bp upstream
Tssr31987	transcription start site region 31987	207 bp upstream
Tssr31988	transcription start site region 31988	1089 bp upstream
Tssr35894	transcription start site region 35894	353 bp downstream
Tssr35895	transcription start site region 35895	688 bp downstream