rs30918734 SNP Detail

Summary

• ID
  rs30918734
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135776722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCTGTGAG TGACCCTAGC CCGGCCACTG AGCCCTCGGT
  CCCATATCTC TTCACAGACA TTGGTTCAAG TGGCAGCATT TATCACATCA CATAAATCCA
  K
  GTCATTGACC CAGTGTTGAC ATCGTACCAA TGAACAGGAC AGACAGACAG ACCAGGGCCT
  CATGTCCATG ATTTTAAGAC CCTCTAGCCC CCATCCCTT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss45168351	mCV24740607	ABI	CRAMUS_MOUSE	f	SNP		T	T		G
ss49683311	NES12972939	PERLEGEN	MM_PANEL2	f	SNP	T			T	G	G	T
ss145548307	ENSMUSSNP4169764	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs30918734					SNP	T	T	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683311	NES12972939	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135776722 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	1122 bp distal
Rr12645	regulatory region 12645	1679 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	1244 bp downstream
Tssr226	transcription start site region 226	974 bp upstream
Tssr227	transcription start site region 227	456 bp downstream
Tssr9015	transcription start site region 9015	1248 bp downstream
Tssr9016	transcription start site region 9016	996 bp downstream
Tssr9017	transcription start site region 9017	958 bp downstream
Tssr9018	transcription start site region 9018	940 bp downstream
Tssr9019	transcription start site region 9019	907 bp downstream
Tssr9020	transcription start site region 9020	136 bp downstream
Tssr9021	transcription start site region 9021	116 bp downstream
Tssr9022	transcription start site region 9022	359 bp upstream
Tssr9023	transcription start site region 9023	378 bp upstream
Tssr9024	transcription start site region 9024	472 bp upstream
Tssr9025	transcription start site region 9025	761 bp upstream
Tssr9026	transcription start site region 9026	963 bp upstream
Tssr9027	transcription start site region 9027	1073 bp upstream
Tssr9028	transcription start site region 9028	1113 bp upstream
Tssr9029	transcription start site region 9029	1693 bp upstream
Tssr9030	transcription start site region 9030	1728 bp upstream
Tssr9031	transcription start site region 9031	1787 bp upstream
Tssr13890	transcription start site region 13890	1209 bp upstream
Tssr13891	transcription start site region 13891	964 bp upstream
Tssr13892	transcription start site region 13892	897 bp upstream
Tssr13893	transcription start site region 13893	880 bp upstream
Tssr13894	transcription start site region 13894	131 bp upstream
Tssr13895	transcription start site region 13895	87 bp upstream
Tssr13896	transcription start site region 13896	394 bp downstream
Tssr13897	transcription start site region 13897	465 bp downstream
Tssr13898	transcription start site region 13898	1753 bp downstream
Tssr13899	transcription start site region 13899	1821 bp downstream
Tssr13900	transcription start site region 13900	1831 bp downstream