rs30918735 SNP Detail

Summary

• ID
  rs30918735
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135776508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAGAAAC CACTTGTCAT
  TTCCTACAAA GTTGAGACAG CCTCTAGTGG GCTTTCAGGT GGCTGTCCTT ACCTAGATGG
  GATACTCTTC TGGAGGTTCC ATCTGCGATG GGCCACTTCC ATCTGCACCC ATGGGGCAGG
  CTGAGCACAA GCATTTGGAG GAGGGGCTAC CTCTGGATTC CTGTACTGGA TTCCTACCAT
  Y
  GCTCATGGGC ACACACAGGA GTGTCTGCCT TTCTCCCTAG GAAAAGCGTC GGGCAGAGCG
  GGCCGAGCAG CAGCGTATTC GCAATGAGCG GGAGAAGGAA AGGCAGAACC GCCTGGCTGT
  GAGTGACCCT AGCCCGGCCA CTGAGCCCTC GGTCCCATAT CTCTTCACAG ACATTGGTTC
  AAGTGGCAGC ATTTATCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	KK/HlJ	MSM/Ms
ss49683312	NES12972938	PERLEGEN	MM_PANEL2	f	SNP	T		T	C		T
ss145548290	ENSMUSSNP4402662	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	KK/HlJ	MSM/Ms
rs30918735					SNP	T	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683312	NES12972938	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135776508 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	908 bp distal
Rr12645	regulatory region 12645	1893 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	1030 bp downstream
Tssr226	transcription start site region 226	760 bp upstream
Tssr227	transcription start site region 227	670 bp downstream
Tssr9015	transcription start site region 9015	1034 bp downstream
Tssr9016	transcription start site region 9016	782 bp downstream
Tssr9017	transcription start site region 9017	744 bp downstream
Tssr9018	transcription start site region 9018	726 bp downstream
Tssr9019	transcription start site region 9019	693 bp downstream
Tssr9020	transcription start site region 9020	35 bp upstream
Tssr9021	transcription start site region 9021	87 bp upstream
Tssr9022	transcription start site region 9022	573 bp upstream
Tssr9023	transcription start site region 9023	592 bp upstream
Tssr9024	transcription start site region 9024	686 bp upstream
Tssr9025	transcription start site region 9025	975 bp upstream
Tssr9026	transcription start site region 9026	1177 bp upstream
Tssr9027	transcription start site region 9027	1287 bp upstream
Tssr9028	transcription start site region 9028	1327 bp upstream
Tssr9029	transcription start site region 9029	1907 bp upstream
Tssr9030	transcription start site region 9030	1942 bp upstream
Tssr13890	transcription start site region 13890	995 bp upstream
Tssr13891	transcription start site region 13891	750 bp upstream
Tssr13892	transcription start site region 13892	683 bp upstream
Tssr13893	transcription start site region 13893	666 bp upstream
Tssr13894	transcription start site region 13894	78 bp downstream
Tssr13895	transcription start site region 13895	88 bp downstream
Tssr13896	transcription start site region 13896	608 bp downstream
Tssr13897	transcription start site region 13897	679 bp downstream
Tssr13898	transcription start site region 13898	1967 bp downstream