rs30918736 SNP Detail

Summary

• ID
  rs30918736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135775835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCGCTAAG CCAAGCCAGT
  ACCTTTTGCA TTGAGCCACC CATTTCATGG GCGCGGCAGG CTCTCAGGCA GGCTCTCCCC
  ACAGGACATC CACAGGAAGC GCGTGGAGAA GGACCTGAAT GAGCTACAGA CTCTGATCGA
  GGCTCACTTC GAGAACAGGA AGAAGGAGGA AGAGGAGCTG ATTTCCCTCA AAGACAGGAT
  Y
  GTATGTGCCA CTCTGTCACA GTTTGCCCTG TCCCCCTTCC CCTGCAGCCC GCCTCAAGCT
  GCCAACCTGT TGGACACTGC TCTGCTTGGG CCCCTGCCAC CTGCCTGTCA CTGTGGGTGC
  TCCTTGCCAA CAGGAACTGA CCCTGATAAG TTCTGGCTCT CGCGGAGCCT AACTAGGCAC
  CACTGGCTAT AGACCACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss49683313	NES12972937	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30918736					SNP	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683313	NES12972937	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135775835 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	235 bp distal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	357 bp downstream
Tssr226	transcription start site region 226	87 bp upstream
Tssr227	transcription start site region 227	1343 bp downstream
Tssr9014	transcription start site region 9014	1367 bp downstream
Tssr9015	transcription start site region 9015	361 bp downstream
Tssr9016	transcription start site region 9016	109 bp downstream
Tssr9017	transcription start site region 9017	71 bp downstream
Tssr9018	transcription start site region 9018	53 bp downstream
Tssr9019	transcription start site region 9019	20 bp downstream
Tssr9020	transcription start site region 9020	708 bp upstream
Tssr9021	transcription start site region 9021	760 bp upstream
Tssr9022	transcription start site region 9022	1246 bp upstream
Tssr9023	transcription start site region 9023	1265 bp upstream
Tssr9024	transcription start site region 9024	1359 bp upstream
Tssr9025	transcription start site region 9025	1648 bp upstream
Tssr9026	transcription start site region 9026	1850 bp upstream
Tssr9027	transcription start site region 9027	1960 bp upstream
Tssr9028	transcription start site region 9028	2000 bp upstream
Tssr13890	transcription start site region 13890	322 bp upstream
Tssr13891	transcription start site region 13891	77 bp upstream
Tssr13892	transcription start site region 13892	10 bp upstream
Tssr13893	transcription start site region 13893	within coordinates
Tssr13894	transcription start site region 13894	751 bp downstream
Tssr13895	transcription start site region 13895	761 bp downstream
Tssr13896	transcription start site region 13896	1281 bp downstream
Tssr13897	transcription start site region 13897	1352 bp downstream