rs30919274 SNP Detail

Summary

• ID
  rs30919274
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135765051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAGAGGA GTCCATATCC
  CTTCCCAGGA GAGGCAGGCT AAGCTTGTCA ACATTGGAAA GGTTTCCCTG GGACCCACTA
  TGTTCCTGCC AGTGTGGCCC TTGCTTCACC CCAACCTGCC CTTAGGGATG GCTCTTGTTC
  AGAGCCTTCA CATTGTAGGT GGCTTTTCTG ACTTCTGGGA TAGTGAGGGA TTGTTCAGGA
  S
  GTAATTGCTT CGAGTGTAAG ACATTTCCAG CGCATTCTAC AGGGTGTCCG GCTGGGAAGT
  CACCTGACCT CTAGGATTGC TCCTCTGCCC CTCTTCTCAC AGTACAAGTC CTTTTCTCTG
  AGCAGAAGAA TCTGAGGGGA TCAAGTTGCC TTTGCCCCTC CCTTCTCCCC TCTGCTGATA
  CCTCAGCTCA TGGGCTAACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49683420	NES12973115	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30919274					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683420	NES12973115	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135765051 () rs orientation: forward

Symbol	Name	Function Class
Rr419294	regulatory region 419294	890 bp distal
Rr419295	regulatory region 419295	581 bp distal
Rr419296	regulatory region 419296	within coordinates
Rr419297	regulatory region 419297	436 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9005	transcription start site region 9005	917 bp downstream
Tssr9006	transcription start site region 9006	1097 bp upstream
Tssr9007	transcription start site region 9007	1594 bp upstream