rs30919280 SNP Detail

Summary

• ID
  rs30919280
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135764429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACATGAGG GATTTGTTCC
  TGACATCTCT CCTTAGTCTT TTGCTTGTGT CCACCCTGAG TGGTTACCAG GAAATCCATG
  GCCCTTTCAA GAGAGGATAA CACCTACCTC CACATTCAGA GTGGGTGTTT CCAGGACAGA
  CTCTAACATG AGTGCTGTGG AGTGGAGAGT GCTTGCATTC TTGACGGGAA GTGAGTTGGA
  R
  GTCCCGATCT GCCCCTGAAG ATGCTTTGTG GTTTCAAAGT CTTGACTAGA TTGCTTTCCC
  TCCCAAGATC TTACATTATT TTATTTATGA GTAGAGTAGC CTAGAGCATT GCTGGGCCAT
  TAAATACAAC AGAACCCTAA CCAGTTGGAT TTCTCAGATT TAGGTTAAGG ACTACCCAAT
  CCTTTCTTCT AGAGGCCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49683426	NES12973104	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30919280					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683426	NES12973104	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135764429 () rs orientation: forward

Symbol	Name	Function Class
Rr419292	regulatory region 419292	1828 bp distal
Rr419294	regulatory region 419294	268 bp distal
Rr419295	regulatory region 419295	within coordinates
Rr419296	regulatory region 419296	201 bp proximal
Rr419297	regulatory region 419297	1058 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9005	transcription start site region 9005	295 bp downstream
Tssr9006	transcription start site region 9006	1719 bp upstream