rs30919282 SNP Detail

Summary

• ID
  rs30919282
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135764317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCAGTCCCT GTTCAGAGGT AAGACAAGGG
  GGAGCTCTAG GAAGGGACAG AGGTCAGTGG GGGAACATGA GGGATTTGTT CCTGACATCT
  CTCCTTAGTC TTTTGCTTGT GTCCACCCTG AGTGGTTACC AGGAAATCCA TGGCCCTTTC
  W
  AGAGAGGATA ACACCTACCT CCACATTCAG AGTGGGTGTT TCCAGGACAG ACTCTAACAT
  GAGTGCTGTG GAGTGGAGAG TGCTTGCATT CTTGACGGGA AGTGAGTTGG AGGTCCCGAT
  CTGCCCCTGA AGATGCTTTG TGGTTTCAAA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49683429	NES12973098	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	A		A	A		T	A	T		A
ss145547975	ENSMUSSNP3986367	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A						T
ss319993826	CHEV_1_137733156	CHEVERUD	SCREENING_POP	f	SNP											T				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30919282					SNP	T	A	A	A	A	A	A	T	A	A	T	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683429	NES12973098	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135764317 () rs orientation: forward

Symbol	Name	Function Class
Rr419292	regulatory region 419292	1716 bp distal
Rr419294	regulatory region 419294	156 bp distal
Rr419295	regulatory region 419295	within coordinates
Rr419296	regulatory region 419296	313 bp proximal
Rr419297	regulatory region 419297	1170 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9005	transcription start site region 9005	183 bp downstream
Tssr9006	transcription start site region 9006	1831 bp upstream