rs30920112 SNP Detail

Summary

• ID
  rs30920112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:139370225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTGTTA GGTGAACTAA
  TGAGAGCCAC TTCAACTGGA TAAATGCAGA CATTGAGATT ATTTTAGTTT CTTTTAATCG
  GGCTCAGTAT CTGATTCCTT AATTAACTGA CTTATAATTT ACTTAAGGTG AAGCTCTTTT
  TAGTGTATAT TTCTACAGTA TAGTAATCAT TATCACCATA AGAATATAGA AAATTTATTA
  Y
  CACAAGTTTT TTGTTTTAGA CCCTTTTGCC ATTTAGCTCA GTAATTATGA AGTTTTTAAT
  CTTTTGCTTG TATTCTTTGT ATACTTAATA ACTGATTAAA AGTTGGGTTA AGGCCTTTTG
  AAGTTTTATT CTCACAAGCT TTTTTTTAAA TAAACTCTTG AATTGAGTAT AATTGGAGAA
  AGCAGCTGTG GATTTAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49683638	NES12979315	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30920112					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683638	NES12979315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:139370225 () rs orientation: forward

Symbol	Name	Function Class
Gm70730	predicted gene, 70730	within coordinates
Zbtb41	zinc finger and BTB domain containing 41	within coordinates