rs30920264 SNP Detail

Summary

• ID
  rs30920264
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135764057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGTTACA AGCCTGTTCC
  CTGCATATCT GCTCTGGTTT TAAATAGCTT TATCTGAGCA GCTGGAGGAC CACATGAGCT
  TATATGGCGT GGGGTACTTG TTCTTTTAGC CCTGTGCCGG GCACCTGCCA AAATAGCAGC
  CAACACCCCC CATTGTGTTG TTCCCCCCCC CCCCCATCTC CTGCTGCACA TTCCTCCCTC
  Y
  GCGGGGCTTG GCTCACAAGG CCCCAGCCCA CATGCCTGCT TAAAGCTCTC CCCATGCCCT
  GCCCTCAGCC AGTCCCTGCT GAGGCTGAAC AGATACCTCA AGACCTGTGT GCAGTCCCTG
  TTCAGAGGTA AGACAAGGGG GAGCTCTAGG AAGGGACAGA GGTCAGTGGG GGAACATGAG
  GGATTTGTTC CTGACATCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49683431	NES12973096	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30920264					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683431	NES12973096	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135764057 () rs orientation: forward

Symbol	Name	Function Class
Rr419292	regulatory region 419292	1456 bp distal
Rr419293	regulatory region 419293	1892 bp distal
Rr419294	regulatory region 419294	within coordinates
Rr419295	regulatory region 419295	105 bp proximal
Rr419296	regulatory region 419296	573 bp proximal
Rr419297	regulatory region 419297	1430 bp proximal
Tnnt2	troponin T2, cardiac	35 bp upstream
Tssr9005	transcription start site region 9005	61 bp upstream