rs30920889 SNP Detail

Summary

• ID
  rs30920889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138148249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGTCAAC CCTTAAAGTG
  TGTAATCAGG AAATGAGCCA TGAAAAAGAC AAAATGCGGT GTTTTAGTGG GTACATTTCA
  ACACAAGCAG CATTTGGGAT TACATCAGCA AATACAGCAG CCTCTGTCTC CACATAGTTG
  GTCCACTCTT AAAAGGGGCC CACTCTGCTC CCTCGGTTCC CTTCCTGAAA ACTTCTCTCC
  R
  TGTCCGATGG TCCCTGAAAT CCCAGGACCT GGTCGTAACC TGCTGAAATC CGAGGTCGGG
  CTGTTGCTAG GATGGGCACC TCTCCCTCTA GTGTTCCTTC AAAGCCCTTG AGGGCCGCAG
  TGTTGACTCG TCCTGGACCC AGACCCGCAA AACAAGGGGC TGCATTAGCT CGCTAGCGCA
  TGCAACCCGC AAATCAGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46997614	NES10890811	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30920889					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46997614	NES10890811	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138148249 () rs orientation: forward

Symbol	Name	Function Class
Adh5	alcohol dehydrogenase 5 (class III), chi polypeptide	Intron
Cpgi13874	CpG island 13874	55 bp proximal
Gm64924	predicted gene, 64924	within coordinates
Rr398071	regulatory region 398071	446 bp upstream
Rr586135	regulatory region 586135	78 bp proximal
Rr586136	regulatory region 586136	115 bp proximal
Rr586137	regulatory region 586137	616 bp proximal
Rr586138	regulatory region 586138	1065 bp proximal
Rr586139	regulatory region 586139	1920 bp proximal
Tssr31984	transcription start site region 31984	597 bp upstream