rs30920893 SNP Detail

Summary

• ID
  rs30920893
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138148308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTAGTG GGTACATTTC
  AACACAAGCA GCATTTGGGA TTACATCAGC AAATACAGCA GCCTCTGTCT CCACATAGTT
  GGTCCACTCT TAAAAGGGGC CCACTCTGCT CCCTCGGTTC CCTTCCTGAA AACTTCTCTC
  CGTGTCCGAT GGTCCCTGAA ATCCCAGGAC CTGGTCGTAA CCTGCTGAAA TCCGAGGTCG
  R
  GCTGTTGCTA GGATGGGCAC CTCTCCCTCT AGTGTTCCTT CAAAGCCCTT GAGGGCCGCA
  GTGTTGACTC GTCCTGGACC CAGACCCGCA AAACAAGGGG CTGCATTAGC TCGCTAGCGC
  ATGCAACCCG CAAATCAGTA GCTCGCTAGC TAGCGCGTGC AAGCCCGGGA AGAGGGGGGC
  GGGGGGACCG CGGACAGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46997618	NES10890813	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30920893					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46997618	NES10890813	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138148308 () rs orientation: forward

Symbol	Name	Function Class
Adh5	alcohol dehydrogenase 5 (class III), chi polypeptide	Intron
Cpgi13874	CpG island 13874	within coordinates
Gm64924	predicted gene, 64924	within coordinates
Rr398071	regulatory region 398071	387 bp upstream
Rr586135	regulatory region 586135	19 bp proximal
Rr586136	regulatory region 586136	56 bp proximal
Rr586137	regulatory region 586137	557 bp proximal
Rr586138	regulatory region 586138	1006 bp proximal
Rr586139	regulatory region 586139	1861 bp proximal
Tssr31984	transcription start site region 31984	538 bp upstream