rs30920916 SNP Detail

Summary

• ID
  rs30920916
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106365581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACACTAGC CACACATTGA AATCCTATGA AACTGCTTTC
  GTGATGCTTG GGCATGCTAT GCAAGTGTTC GGCCTGTGCA CTGTGTTCTT AGTCATTTCA
  R
  CAGCACCTCA TTCCTTTTTT AATTCTCCAG AATGTCCTTC CTCACCTTCT CTCTTTAGTA
  GTAGTGTAGA GTGCCAGCCT TGTAGAACTT TGTTTTTAAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss47497991	NES11218995	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs30920916					SNP	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47497991	NES11218995	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106365581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20943	CpG island 20943	1045 bp distal
Ctcf	CCCTC-binding factor	within coordinates
Gm5914	predicted gene 5914	1475 bp upstream
Rr185893	regulatory region 185893	within coordinates
Tssr79173	transcription start site region 79173	1970 bp downstream
Tssr82680	transcription start site region 82680	1616 bp upstream
Tssr82681	transcription start site region 82681	1557 bp upstream
Tssr82682	transcription start site region 82682	1452 bp upstream
Tssr82683	transcription start site region 82683	1017 bp upstream