rs30922380 SNP Detail

Summary

• ID
  rs30922380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116991605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCGCACAC TGACTTGTTT
  GTCGGCTTCA TTCTGAAAAC CGCCAGACAT CTTAAAATTT TCTGAAATTC TCATATAATG
  CTTGTGGTGA AGTTTTTGCC GCTAACTGAA AGTTATCACG GAGTTCTATG GCTATAGTGA
  GCAAAGTCTG TTTTCTTTTG TTTTATTTTG TTTTTCTCCC AGACAATGGA TGTAAACCAA
  Y
  GCAACACCAG ACTGCTATTG GAGAACCAGT GTCTGTAGTC GCCGGGTGGA GAAATGGGAG
  AGAGTAAGAT TGAATCGGAG CGTGGTGGCA CACGCCTTTA ATCCCAGCAC TCAGGAGGCA
  GAGGCAGGCG GATTTCTGAG TTTGAGGCCA GCCTGGTCTA CAGAGTGAGT TACAGGACAG
  CCAGGGCTAT ACAGAGAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss47996791	NES11997589	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T		C	C		T
ss323494364	CHEV_10_116592756	CHEVERUD	SCREENING_POP	f	SNP					T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs30922380					SNP	T	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47996791	NES11997589	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116991605 () rs orientation: forward

Symbol	Name	Function Class
Gm53635	predicted gene, 53635	1529 bp upstream