rs30922921 SNP Detail

Summary

• ID
  rs30922921
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:139366413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTAAGTT TAGAATCCTG
  GGCAGGGGTA TTTTTTCACA GAGCTGGGCC CAATCTCCTT TCACTTATCT AGTGTGAGTG
  ACTCTTGGAG ACTAGCACCA TCTGCTGGCA GTATTCCAGC ACATGGTCTG CCTTTTGAAG
  TCACCTGACA GGGAATTGGC ATGAAAACCA AGTCAGGGTG GCTGGAAAAG CCAGCAGAAA
  Y
  CAGGAGCACT TCTCTCTCTC TCAGTAATTT TGTCCATTCT TACTTAGCCC TTGAGGTGTG
  TAGAAAAATG CAGAATGTTA GAACTACAGG TTCTCTGGTC AAGTACCTGC TGAAGTAATG
  ATTAAATTAT AACTCTCCAT TGTAGTAAGG GGTTTGATAT CTGTAGTAAG TATGTACATT
  GGCTTTAAAA GAATTGAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49683668	NES12979271	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30922921					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683668	NES12979271	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:139366413 () rs orientation: forward

Symbol	Name	Function Class
Gm70730	predicted gene, 70730	1582 bp downstream
Gm70983	predicted gene, 70983	1736 bp upstream
Rr419854	regulatory region 419854	within coordinates
Rr419855	regulatory region 419855	88 bp distal
Tssr14063	transcription start site region 14063	1766 bp upstream
Zbtb41	zinc finger and BTB domain containing 41	within coordinates