rs30923069 SNP Detail

Summary

• ID
  rs30923069
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135800275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGGATG CTGCAGACTC
  ACAGTGCCAG AGCACACCGG GTAGATGGCT TAGGACACCT CTCAGGAACA ATGTCCTCAC
  GTAGCTGACC TCCTCAATCC TCAATGGACA GATCGTTTAC TAGGCCACCC TGAGCCATAG
  AGGAATTTTT CGGTCTTACT GCTGGGGTAA GAAGAGGGTT GGGCCAAGGA GCATTCTATA
  Y
  CCTCCTTGAG AGAGGTATGG CCCTTATCAT TCATGTCTAC CCAGCACTAA CCACACCAGT
  GGAGAAGCAA TAGCCTAGAC ATGAAGGCTC TGGGGGAAGG CTCAGCTCTG TCCATCAGTC
  ATTTGTCCTA GGGGGCTTCA CATAGACAGG CTCACTCATG GGGTTCTCAG ATGTTCTTTT
  GGTACTTCTG TCTGCAGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49683175	NES12987258	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C	C	T
ss145548864	ENSMUSSNP144358	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30923069					SNP	T	T	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683175	NES12987258	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135800275 () rs orientation: forward

Symbol	Name	Function Class
Pkp1	plakophilin 1	within coordinates
Rr372095	regulatory region 372095	838 bp upstream
Tssr13903	transcription start site region 13903	648 bp upstream