rs30923071 SNP Detail

Summary

• ID
  rs30923071
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135800219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCTGGTAT CAGAGAGGAG
  GTGAGGTAGG AGGCAGAATC CCACACAAGC CAAACAGGGA AGGATGCTGC AGACTCACAG
  TGCCAGAGCA CACCGGGTAG ATGGCTTAGG ACACCTCTCA GGAACAATGT CCTCACGTAG
  CTGACCTCCT CAATCCTCAA TGGACAGATC GTTTACTAGG CCACCCTGAG CCATAGAGGA
  R
  TTTTTCGGTC TTACTGCTGG GGTAAGAAGA GGGTTGGGCC AAGGAGCATT CTATACCCTC
  CTTGAGAGAG GTATGGCCCT TATCATTCAT GTCTACCCAG CACTAACCAC ACCAGTGGAG
  AAGCAATAGC CTAGACATGA AGGCTCTGGG GGAAGGCTCA GCTCTGTCCA TCAGTCATTT
  GTCCTAGGGG GCTTCACATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45140027	mCV23238872	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss49683177	NES12987254	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		A	A	A	G	G	A	A	G	A
ss145548856	ENSMUSSNP3485367	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30923071					SNP	G	G	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683177	NES12987254	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135800219 () rs orientation: forward

Symbol	Name	Function Class
Pkp1	plakophilin 1	within coordinates
Rr372095	regulatory region 372095	894 bp upstream
Tssr13903	transcription start site region 13903	592 bp upstream