rs30923072 SNP Detail

Summary

• ID
  rs30923072
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135800105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGTGACTG GCAAAGGAGA TCACAAGAAG
  CCTACCCAAG GACAGTGTGG TGGGACAGCA TCCCACGCTG GTATCAGAGA GGAGGTGAGG
  TAGGAGGCAG AATCCCACAC AAGCCAAACA GGGAAGGATG CTGCAGACTC ACAGTGCCAG
  W
  GCACACCGGG TAGATGGCTT AGGACACCTC TCAGGAACAA TGTCCTCACG TAGCTGACCT
  CCTCAATCCT CAATGGACAG ATCGTTTACT AGGCCACCCT GAGCCATAGA GGAATTTTTC
  GGTCTTACTG CTGGGGTAAG AAGAGGGTTG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45109075	mCV23238876	ABI	CRAMUS_MOUSE	f	SNP		T	A						A
ss49683178	NES12987252	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A	A	A	A	A	T		A	A	A	A		A
ss145548852	ENSMUSSNP5433802	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A						A
ss319993926	CHEV_1_137768944	CHEVERUD	SCREENING_POP	f	SNP												T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30923072					SNP	T	T	A	A	A	A	A	A	A	A	T	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683178	NES12987252	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135800105 () rs orientation: forward

Symbol	Name	Function Class
Pkp1	plakophilin 1	within coordinates
Rr372095	regulatory region 372095	1008 bp upstream
Tssr13903	transcription start site region 13903	478 bp upstream