rs30923663 SNP Detail

Summary

• ID
  rs30923663
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138351281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTATGTA GCCACTCAGT
  TCTCTCCCTC CGGAGGCTGT GTATCTTTTC CAGAAAGTTC TCTAGGCTTG GCTTCAAGGC
  TTGCTGCCTT TTGCTTTCTC CACTGAGTCA CTCACACCAT GAAATGTCAG AGCAGCTGGC
  CAAACACCAA GGGCCTGGTT AAAACAATAA AGGCTTTCTG GAGCCTCCAG CGAGCTGATG
  Y
  GAACGGTTGT TTCCTAAACA AAACAATCCC ATGGAGGCTC TGCCACCTGC TGGGAAACAC
  TTCCTGCCTG TGTGTATAAT TTGAGAACCA AACCTGTTAT GGTGTGTTCT GTGAATCACT
  CTGCCTGGGT AAGGAGCCTG GTTGGTTTTA GTCTTGTATT GTTTGCAGTG AGCTAACTGG
  GCTAACTCTA GAAATGACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss46998846	NES10882836	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs30923663					SNP	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46998846	NES10882836	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138351281 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13877	CpG island 13877	1240 bp distal
Gm43723	predicted gene 43723	1576 bp upstream
Rr586173	regulatory region 586173	within coordinates
Rr586174	regulatory region 586174	37 bp proximal
Rr586175	regulatory region 586175	1363 bp proximal