rs30923824 SNP Detail

Summary

• ID
  rs30923824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:139366221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATAGTAGG GGAGTTGGGA
  AATCATTATG GTACTTAATA TAAAATCGTT CTTACAGATT AGAAAATAAT AACTGTATTT
  TTCCCTTATA GAACTTTATA TAAATACAAA AAGTTCAAAG TCAAAAAGGA AAAACAATAC
  AATGAAGATA AACAGAAAAA GATCCTTTTC TGTTTACTCT AGCTGCTTTT ATATATTAAG
  Y
  TTAGAATCCT GGGCAGGGGT ATTTTTTCAC AGAGCTGGGC CCAATCTCCT TTCACTTATC
  TAGTGTGAGT GACTCTTGGA GACTAGCACC ATCTGCTGGC AGTATTCCAG CACATGGTCT
  GCCTTTTGAA GTCACCTGAC AGGGAATTGG CATGAAAACC AAGTCAGGGT GGCTGGAAAA
  GCCAGCAGAA ATCAGGAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49683671	NES12979267	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30923824					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683671	NES12979267	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:139366221 () rs orientation: forward

Symbol	Name	Function Class
Gm70730	predicted gene, 70730	1774 bp downstream
Gm70983	predicted gene, 70983	1544 bp upstream
Rr419854	regulatory region 419854	3 bp proximal
Rr419855	regulatory region 419855	83 bp proximal
Tssr14063	transcription start site region 14063	1574 bp upstream
Zbtb41	zinc finger and BTB domain containing 41	within coordinates