rs30923926 SNP Detail

Summary

• ID
  rs30923926
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135799643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATGACAGG CACATGTTGG GCCCAGCCCA
  TCTGGCCAGC TTGAGATCAT GGAAGAAGTT CCCACAATTG AGCCTGACCT CTGGGTATCT
  TAAGACCTGC TTCATCACCA AAGCAAATGG TGAACCTACC CAACCTTCCT CCCAGGGAAA
  R
  GAAAACTGAG TCCGAGGGCT GCAGGAAGTG AGGATGATAC TGGGGGGTTG GGTGGGAACG
  TCATTCTTGA GGGCCTACAG CAGTCTCCCT TGTTGACTTG AACGTTCTAC ATGATTTTCT
  CAAATTGACT GAGTAAGTGG ATAGTCCCTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45030989	mCV23238884	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A		A
ss49683182	NES12987248	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A	A	G		A	A	A	A		A
ss145548836	ENSMUSSNP6727138	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								A
ss319993921	CHEV_1_137768482	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30923926					SNP	G	G	A	A	A	A	A	A	G	A	A	G	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683182	NES12987248	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135799643 () rs orientation: forward

Symbol	Name	Function Class
Gm28883	predicted gene 28883	1755 bp downstream
Pkp1	plakophilin 1	within coordinates
Rr372095	regulatory region 372095	1470 bp upstream
Tssr13903	transcription start site region 13903	16 bp upstream