rs30923927 SNP Detail

Summary

• ID
  rs30923927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135799434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCATACAA GATGGAGCAA
  GGACAGTGAG GGCTGGACGG AGGGTCCCAG ACGCTGCAGC AAGTCCAAAA GTCAAGGAAG
  ACACAGGGCC TCTGTCCTTT CTCATTTGGT CCTAAATTGT AACTTGTTTT AGATATGGAA
  CTAGGAGGCA AATTTGATGA AAAAAACCAT GAAGATAAGT CTGGGATACA GAAAGTCCAG
  Y
  CAGCCCCTTA CCTCCTGCTT CTAGGAATTT ATTCATAAGT CCCTTTAATT TTTCCCTGGA
  ATGACAGGCA CATGTTGGGC CCAGCCCATC TGGCCAGCTT GAGATCATGG AAGAAGTTCC
  CACAATTGAG CCTGACCTCT GGGTATCTTA AGACCTGCTT CATCACCAAA GCAAATGGTG
  AACCTACCCA ACCTTCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49683183	NES12987247	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30923927					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683183	NES12987247	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135799434 () rs orientation: forward

Symbol	Name	Function Class
Gm28883	predicted gene 28883	1546 bp downstream
Pkp1	plakophilin 1	within coordinates
Rr372095	regulatory region 372095	1679 bp upstream
Tssr13903	transcription start site region 13903	191 bp downstream