rs30924572 SNP Detail

Summary

• ID
  rs30924572
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135766923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTGAGAT GCCTTCAGGA
  CTTGGGTTAT AATAAAACGG GGTGAATTTG TACACCAGGT CAGGCTACAG CACTATCTCT
  AATCTTGACA TTCTGTTTCA TACACCACAG GGGAGGAGAT ATTTCCCAAA GGGAATTATG
  TTCTGGGAAA ACATGACCTT TCCAATGTCA TAGTCAAGGA CTCTAGGGAG GCAGCATTCA
  R
  AGGCAGATGA ATCTCATACC GAGACCTTAC TCTTTCCACC TCTGCCCATG GCTTCCTGTG
  ACTACAGAGT TCGTACGACT ACACTTGGCC ATGTCTAAGC ATCCGCTCAT TCATATCTGC
  TGGATCCTCA CAGGGTCCCT TAGCGGGCAT GTCTGCACTC CATCATTTAG AGAGAACCGA
  ACTGAGGAGG TTCCTCTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49683392	NES12973065	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30924572					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683392	NES12973065	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135766923 () rs orientation: forward

Symbol	Name	Function Class
Rr419296	regulatory region 419296	1600 bp distal
Rr419297	regulatory region 419297	within coordinates
Rr419298	regulatory region 419298	1423 bp proximal
Rr419299	regulatory region 419299	1701 bp proximal
Rr419300	regulatory region 419300	1966 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9006	transcription start site region 9006	762 bp downstream
Tssr9007	transcription start site region 9007	274 bp downstream
Tssr9008	transcription start site region 9008	1486 bp upstream
Tssr9009	transcription start site region 9009	1672 bp upstream
Tssr13887	transcription start site region 13887	1721 bp downstream