rs30924575 SNP Detail

Summary

• ID
  rs30924575
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138351515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCTCTGC CACCTGCTGG
  GAAACACTTC CTGCCTGTGT GTATAATTTG AGAACCAAAC CTGTTATGGT GTGTTCTGTG
  AATCACTCTG CCTGGGTAAG GAGCCTGGTT GGTTTTAGTC TTGTATTGTT TGCAGTGAGC
  TAACTGGGCT AACTCTAGAA ATGACAGGAT GGTGGGTGAA CAACCAGGTT AGACGCTGGC
  Y
  ACTCACACAG TTTCCAAGAG CCCCAGTCTC CGGCCAGTGT GCGAGTGTAC ATGTGTGTGC
  ACCTATGTAG AGGTGTATGT GAATACATGC GCTAGGAAAC CTCATAGATA TTGTGAGATG
  GTGAAGATTG CATCTACAAA CTCGTCTCCG GGGCACGTGA TGTATACAGG TCACAGGATA
  AGGTATATGG GTCAAGGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46998848	NES10882838	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30924575					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46998848	NES10882838	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138351515 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13877	CpG island 13877	1474 bp distal
Gm43723	predicted gene 43723	1810 bp upstream
Rr586173	regulatory region 586173	30 bp distal
Rr586174	regulatory region 586174	176 bp distal
Rr586175	regulatory region 586175	1129 bp proximal