rs30924578 SNP Detail

Summary

• ID
  rs30924578
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138351781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCT TACCTCAAAG TGGTCTAAAG
  M
  AGATGAGAGC AGTTTCCAAA CCTTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss45534284	mCV22920459	ABI	CRAMUS_MOUSE	f	SNP	C				A		C
ss46998852	NES10882842	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A		C	C	A		C	C
ss320980836	CHEV_3_138308984	CHEVERUD	SCREENING_POP	f	SNP									A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30924578					SNP	C	A	A	A	A	C	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46998852	NES10882842	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138351781 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13877	CpG island 13877	1740 bp distal
Rr586173	regulatory region 586173	296 bp distal
Rr586174	regulatory region 586174	442 bp distal
Rr586175	regulatory region 586175	863 bp proximal