rs30924865 SNP Detail

Summary

• ID
  rs30924865
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138287577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGATCCGG GACATTAAGC
  TTCTTTCGCT GTTGCCTCAG TCCATCAAGG AAGCACTTCG AGTCAATTAT CCTTAGAATG
  TTCCTTCTGT GCCACTGTGA CTTGGTGACA TTTCCCTGGG CTGCTTCTCA TGACCTATTT
  ATAGGACCTG TTTTAAAAAT ATACTTGGTT TGACACTTTA GATAAACTAT TAGAACTGTG
  R
  CAATCTGGGT AGAAAAGGTT ATGAAAATTA ATAGAAAGTA AACAAATAGA ACATGGTTTA
  TGATTTCCAT AGTCACCAAC AGCCTAGCCC CTTCCTCTGG CAGTGACCAT GGGGCCCGAA
  GCATTTCTGT CTCAGCTCAG TGCTGGTTAG ACTCCAAGAC ACCTTCCCTA CTGTCACTCC
  CATTAGCCTT CCTGGCCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46998376	NES10885245	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30924865					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46998376	NES10885245	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138287577 () rs orientation: forward

Symbol	Name	Function Class
Gm43726	predicted gene 43726	1255 bp upstream
Gm66723	predicted gene, 66723	within coordinates
Rr586166	regulatory region 586166	1586 bp proximal