rs30924971 SNP Detail

Summary

• ID
  rs30924971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135797709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTACATA AAGATGACTG
  GAGGTGAAGG GCCTCCCAGA CGACATCCCC TTCCGGAACC CCAACACCTA TGACATCCAT
  CGGCTGGAGA AGATCCTGAA GGCCAGGGAG CATGTGCGGA TGGTCATCAT CAACCAGCTC
  CAACCTTTTG GGGACGTCTG CAACAATGCC AAGGTGCCAG CCAAAGACAA CATTTCCAAG
  Y
  GCAAGAGAAA GAGGGTCTCT GAAGGCAACT CAGTCTCCTC CTCTTCCTCC TCTTCATCTT
  TGTCCTCTAA CCCAGAGTCT GTGGCATCCA CTAACCAGAT CTCCCTCGTG CAGTGGCCAG
  TGTACATGGT GGACTATTCC GGACTAAACA TGCAGCTTCC GGGCCCCCTT GATTATTAGA
  CCTCAGAGCC GAATCAGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49683200	NES12987320	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30924971					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683200	NES12987320	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135797709 () rs orientation: forward

Symbol	Name	Function Class
Gm28883	predicted gene 28883	within coordinates
Pkp1	plakophilin 1	1424 bp downstream
Tssr13903	transcription start site region 13903	1916 bp downstream