rs30924972 SNP Detail

Summary

• ID
  rs30924972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135797663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAGAAAG TGAGTCAATG
  AATCTATACA TTGCTTCCAA ACATAAAGTG TACATAAAGA TGACTGGAGG TGAAGGGCCT
  CCCAGACGAC ATCCCCTTCC GGAACCCCAA CACCTATGAC ATCCATCGGC TGGAGAAGAT
  CCTGAAGGCC AGGGAGCATG TGCGGATGGT CATCATCAAC CAGCTCCAAC CTTTTGGGGA
  Y
  GTCTGCAACA ATGCCAAGGT GCCAGCCAAA GACAACATTT CCAAGCGCAA GAGAAAGAGG
  GTCTCTGAAG GCAACTCAGT CTCCTCCTCT TCCTCCTCTT CATCTTTGTC CTCTAACCCA
  GAGTCTGTGG CATCCACTAA CCAGATCTCC CTCGTGCAGT GGCCAGTGTA CATGGTGGAC
  TATTCCGGAC TAAACATGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49683201	NES12987319	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30924972					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683201	NES12987319	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135797663 () rs orientation: forward

Symbol	Name	Function Class
Gm28883	predicted gene 28883	within coordinates
Pkp1	plakophilin 1	1470 bp downstream
Tssr13903	transcription start site region 13903	1962 bp downstream