rs30925113 SNP Detail

Summary

• ID
  rs30925113
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117112225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATTTCTGA CTGTTCAGTT TCTTAAGATC TTTGGAAGCT
  CTTAGCTATG GTGGCTGCTG GGACTTTTGC AAAGGCTGTC ATTCCTCTAG GCTCAGAGGG
  R
  AGCTCAGTTA ACCAGCAGGT GCTCTGAATT TGAATGAAAA AGCAAAGGGA ACTGAATTGA
  GGCCACTCTT GGAGAGCAAA TGACAGGCAC AAAATGCACT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47997453	NES11997433	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30925113					SNP	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47997453	NES11997433	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117112225 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	within coordinates
Lyz2	lysozyme 2	1221 bp downstream
Rr439488	regulatory region 439488	422 bp distal
Tssr95904	transcription start site region 95904	1009 bp upstream
Tssr95905	transcription start site region 95905	1065 bp upstream
Tssr95906	transcription start site region 95906	1127 bp upstream
Tssr95907	transcription start site region 95907	1144 bp upstream
Tssr95908	transcription start site region 95908	1320 bp upstream
Tssr95909	transcription start site region 95909	1396 bp upstream
Tssr95910	transcription start site region 95910	1531 bp upstream
Tssr95911	transcription start site region 95911	1661 bp upstream
Tssr95912	transcription start site region 95912	1756 bp upstream
Tssr95913	transcription start site region 95913	1816 bp upstream
Tssr99410	transcription start site region 99410	1110 bp downstream
Tssr99411	transcription start site region 99411	1162 bp downstream
Tssr99412	transcription start site region 99412	1283 bp downstream
Tssr99413	transcription start site region 99413	1344 bp downstream
Tssr99414	transcription start site region 99414	1433 bp downstream
Tssr99415	transcription start site region 99415	1516 bp downstream
Tssr99416	transcription start site region 99416	1566 bp downstream
Tssr99417	transcription start site region 99417	1678 bp downstream
Tssr99418	transcription start site region 99418	1692 bp downstream
Tssr99419	transcription start site region 99419	1707 bp downstream
Tssr99420	transcription start site region 99420	1779 bp downstream
Tssr99421	transcription start site region 99421	1853 bp downstream