rs30925177 SNP Detail

Summary

• ID
  rs30925177
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:157455899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTGAAC TACCCCCACA
  TAGTTGATAA ATTCTAGGAC ATTTTCTCCT AACTCCGGTA AGAACAAAGA ATTGTTTCTT
  AGACAGTTTT TCTATAATTT CTCTCTCGAG GGAATCATCC TTTCTCTCAA ATGTCCAAGG
  AGAGAGATGT TTGCTAGGAT GGAGCAATTA ATGTTTGTGT ATGTCCTTGG CTCGATGAAG
  W
  CTTCCAGCCC TGGGGACAAT TCTGGGTGTA TAATATCTTG ATGGCCTCTG GCTGGATCCC
  ATTGTGGGGG AATTTCAGTT TCCTCTGAAT TGCCTCTCAG TCCCTAGTGG ATTGTGATGC
  CAAATCTGTC AGACCCAGTC CTCTACCTCA ACAACACTGG GACTCTTGAC TGCTATGTGC
  TTTTCACTAC ACTCTATGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47498295	NES10313222	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30925177					SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47498295	NES10313222	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:157455899 () rs orientation: forward

Symbol	Name	Function Class
Gm33466	predicted gene, 33466	within coordinates
Gm65305	predicted gene, 65305	1487 bp upstream
Rr588055	regulatory region 588055	1607 bp distal
Tssr32497	transcription start site region 32497	1549 bp upstream