rs30925424 SNP Detail

Summary

• ID
  rs30925424
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138352800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATAGTCT TGTTAGACCC
  ACGCCTTCTA GCCATCTTGA AGAAGCCACC TCTTGGTGGC ACCATATCAT ATCCCTACGA
  GCAAGAATGA GGGATATTGA TGGTGGCTTA GATGAAGCAG GTTGTGGGGG GAAACTGGCC
  TCTGGACTGT GAGTGGGACA CTCTATAGAA AGCTAGCATT TCTTTGGCCT CCTTGTTTCT
  Y
  CTAGAATCCA TACATTTGGC TGCAGGCCCA CATTTCTGTG TTGAAATTTA GTTGACAAAG
  CAACAGTGTT GGACATGAGG ACTTTGGAAA TGGATTGCAA AAGCAAACCC CACATGGATG
  GAAGTAGTTG CCCTTCTTTA AGAAGAGTTC GATGTACATT TTTCTGTCTC TCCCACCTTG
  CGAACGTGCT TTGTCACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46998858	NES10882798	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30925424					SNP	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46998858	NES10882798	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138352800 () rs orientation: forward

Symbol	Name	Function Class
Rr586173	regulatory region 586173	1315 bp distal
Rr586174	regulatory region 586174	1461 bp distal
Rr586175	regulatory region 586175	135 bp distal