rs30925534 SNP Detail

Summary

• ID
  rs30925534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135766720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTGCTTCT ACCGATCTTG AGTTTGTCAC
  ACTGGGGGCT TATACTCCCC CTTGCCCTGT TTTTTTTTTT TTTTTTTGGT CAGGAAATTA
  TATTGCAAAG AACAAGGGGC ATTGTCAACA TTTCAGTCAA TGTGCCTATT GTCTTTGGGC
  Y
  AGGCACTGAG ATGCCTTCAG GACTTGGGTT ATAATAAAAC GGGGTGAATT TGTACACCAG
  GTCAGGCTAC AGCACTATCT CTAATCTTGA CATTCTGTTT CATACACCAC AGGGGAGGAG
  ATATTTCCCA AAGGGAATTA TGTTCTGGGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49683394	NES12973063	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	C	C	C	T	C	T		T	C	T	C		C
ss145548091	ENSMUSSNP876176	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss319993854	CHEV_1_137735559	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30925534					SNP	T	T	C	T	C	C	C	C	T	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683394	NES12973063	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135766720 () rs orientation: forward

Symbol	Name	Function Class
Rr419296	regulatory region 419296	1397 bp distal
Rr419297	regulatory region 419297	within coordinates
Rr419298	regulatory region 419298	1626 bp proximal
Rr419299	regulatory region 419299	1904 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9006	transcription start site region 9006	559 bp downstream
Tssr9007	transcription start site region 9007	71 bp downstream
Tssr9008	transcription start site region 9008	1689 bp upstream
Tssr9009	transcription start site region 9009	1875 bp upstream
Tssr13887	transcription start site region 13887	1924 bp downstream