rs30925535 SNP Detail

Summary

• ID
  rs30925535
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135766680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCGATCTTG AGTTTGTCAC ACTGGGGGCT TATACTCCCC
  CTTGCCCTGT TTTTTTTTTT TTTTTTTGGT CAGGAAATTA TATTGCAAAG AACAAGGGGC
  R
  TTGTCAACAT TTCAGTCAAT GTGCCTATTG TCTTTGGGCC AGGCACTGAG ATGCCTTCAG
  GACTTGGGTT ATAATAAAAC GGGGTGAATT TGTACACCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49683395	NES12973062	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	A	A	A	G	A	G	A	A	G	A	A
ss145548081	ENSMUSSNP3766256	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30925535					SNP	G	G	A	G	A	A	A	A	G	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49683395	NES12973062	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135766680 () rs orientation: forward

Symbol	Name	Function Class
Rr419296	regulatory region 419296	1357 bp distal
Rr419297	regulatory region 419297	within coordinates
Rr419298	regulatory region 419298	1666 bp proximal
Rr419299	regulatory region 419299	1944 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9006	transcription start site region 9006	519 bp downstream
Tssr9007	transcription start site region 9007	31 bp downstream
Tssr9008	transcription start site region 9008	1729 bp upstream
Tssr9009	transcription start site region 9009	1915 bp upstream
Tssr13887	transcription start site region 13887	1964 bp downstream